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PUBLICATIONS

  1. Ane, C. & Fogg, J. & Allman, E. & Banos, H. & Rhodes, J. "Anomalous networks under the multispecies coalescent: theory and prevalence" Journal of Mathematical Biology (2024) https://doi.org/10.1007/s00285-024-02050-7.

  2. Baños, H. & Susko, E. & Roger, A.J. "Is Over-parameterization a Problem for Profile Mixture Models?" Systematic Biology (2023) https://doi.org/10.1093/sysbio/syad063.

  3. Allman, E. & Baños, H. & Mitchell J. & Rhodes, J. "The Tree of Blobs of a Species Network: Identifiability under the Coalescent,"  Journal of Mathematical Biology (2023) 86:10 https://doi.org/10.1007/s00285-022-01838-9.

  4. Allman, E. & Baños, H. & Rhodes, J. "Testing Multispecies Coalescent Simulators using Summary Statistics," IEEE/ACM Trans Comput Biol Bioinform (2022), doi: 10.1109/TCBB.2022.3177956.

  5. Allman, E. & Baños, H. & Rhodes, J. "Identifiability of species network topologies from genomic sequences using the logDet distance," Journal of Mathematical Biology (2022) 84:35 https://doi.org/10.1007/s00285-022-01734-2. 

  6. Baños, H. & Bushek, N. & Davidson, R. & et al. "Phylogenetic trees," Journal of Software for Algebra and Geometry, Vol. 11 (2021), 1–7, DOI: 10.2140/jsag.2021.11.1

  7. Rhodes J. & Baños, H. & Mitchell, J. & Allman, E. "MSCquartets 1.0: Quartet methods for species trees and networks under the multispecies coalescent model in R," Bioinformatics (2020), btaa868, https://doi.org/10.1093/bioinformatics/btaa868​​

  8. Allman, E. & Baños, H. & Rhodes, J. "NANUQ: A method for inferring species networks from gene trees under the coalescent model," Algorithms for Molecular Biology volume 14, Article number: 24 (2019).  https://doi.org/10.1186/s13015-019-0159-2 

  9. Baños, H. "Identifying Species Network Features from Gene Tree Quartets Under the Coalescent Model," Bull Math Biol (2019) 81: 494. https://doi.org/10.1007/s11538-018-0485-4

  10. Allman, E. & Baños, H. & Evans, R. & Hosten, S.  & Kubjas, K. & Lemke, D. & Rhodes, J. & Zwiernik, P. (2019). "Maximum likelihood estimation of the Latent Class Model through model boundary decomposition," Journal of Algebraic Statistics. Vol 10 No 1 (2019): Issue in honor of S. E. Fienberg. https://ora.ox.ac.uk/objects/uuid:301ecb1e-2c67-458c-818f-6b689419e36c

  11. Baños, H. & Bushek, N. & Davidson, R. & et al. "Dimensions of Group-Based Phylogenetic Mixtures," Bull Math Biol (2018) 81: 316. https://doi.org/10.1007/s11538-018-0489-0

  12. Baños, H. & Oliveros, D. "A note on the intersection property for flat boxes and boxicity in ℝ^𝑑," Acta Math. Hungar. (2018) 155: 74. https://doi.org/10.1007/s10474-018-0817-8

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